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View Structure Prediction Details

Protein: MAD2_ARATH
Organism: Arabidopsis thaliana
Length: 209 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAD2_ARATH.

Description E-value Query
Range
Subject
Range
gi|218195086 - gi|218195086|gb|EEC77513.1| hypothetical protein OsI_16383 [Oryza sativa Indica Group]
gi|215767269, gi... - gi|215767269|dbj|BAG99497.1| unnamed protein product [Oryza sativa Japonica Group], gi|115459076|ref...
266.0 [0..1] [208..1]

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Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKTAAAKD IITLHGSAAI VSEFFCYAAN SILYNRAVYP EESFVKVKKY GLPMLLIEDE  60
   61 SVKSFMSNLT SQISEWLEAG KLQRVVLVIM SKATGEVLER WNFRIETDNE VVDKGVSREK 120
  121 SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ 180
  181 MVKLHGFDTK IHKVDTLVSY KNDEWDEEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.30103
Match: 1s2hA
Description: The Mad2 spindle checkpoint protein possesses two distinct natively folded states
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.14424444268625 bayes_pls_golite062009
protein binding 0.856075580719879 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle