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View Structure Prediction Details

Protein: LCYE_ARATH
Organism: Arabidopsis thaliana
Length: 524 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCYE_ARATH.

Description E-value Query
Range
Subject
Range
gi|1399181 - gi|1399181|gb|AAB53336.1| lycopene epsilon cyclase
366.0 [0..1] [524..1]

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Predicted Domain #1
Region A:
Residues: [1-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECVGARNFA AMAVSTFPSW SCRRKFPVVK RYSYRNIRFG LCSVRASGGG SSGSESCVAV  60
   61 REDFADEEDF VKAGGSEILF VQMQQNKDMD EQSKLVDKLP PISIGDGALD LVVIGCGPAG 120
  121 LALAAESAKL GLKVGLIGPD LPFTNNYGVW EDEFNDLGLQ KCIEHVWRET IVYLDDDKPI 180
  181 TIGRAYGRVS RRLLHEELLR RCVESGVSYL SSKVDSITEA SDGLRLVACD DNNVIPCRLA 240
  241 TVASGAASGK LLQYEVGGPR VCVQTAYGVE VEVENSPYDP DQMVFMDYRD YTNEKVRSLE 300
  301 AEYPTFLYAM PMTKSRLFFE ETCLASKDVM PFDLLKTKLM LRLDTLGIRI LKTYEEEWSY 360
  361 IPVGGSLPNT EQKNLAFGAA ASMVHPATGY SVVRSLSEAP KYASVIAEIL REETTKQINS 420
  421 NISRQAWDTL WPPERKRQRA FFLFGLALIV Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 2bryA
Description: Crystal structure of the native monooxygenase domain of MICAL at 1.45 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [452-524]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDTEGIRSFF RTFFRLPKWM WQGFLGSTLT SGDLVLFALY MFVISPNNLR KGLINHLISD  60
   61 PTGATMIKTY LKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.522879
Match: 2qa2A
Description: No description for 2qa2A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle