| Protein: | LBD6_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 199 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LBD6_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
213.0 | [0..7] | [195..10] |
|
Region A: Residues: [1-117] |
1 11 21 31 41 51
| | | | | |
1 MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPS 60
61 QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQI DLSCAKSELS KYQSLGI
|
| Detection Method: |  |
| Confidence: | 71.619789 |
| Match: | PF03195.5 |
| Description: | No description for PF03195.5 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.448 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.403 | N/A | N/A | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.382 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.379 | N/A | N/A | d.112.1 | Phoshotransferase/anion transport protein |
| View | Download | 0.340 | N/A | N/A | a.29.2 | Bromodomain |
|
Region A: Residues: [118-199] |
1 11 21 31 41 51
| | | | | |
1 LAATHQSLGI NLLAGAADGT ATAVRDHYHH HQFFPREQMF GGLDVPAGNN YDGGILAIGQ 60
61 ITQFQQPRAA AGDDGRRTVD PS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.339 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.274 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.262 | a.4.1 | Homeodomain-like |
| View | Download | 0.259 | a.4.1 | Homeodomain-like |
| View | Download | 0.254 | a.77.1 | DEATH domain |
