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View Structure Prediction Details

Protein: LBD36_ARATH
Organism: Arabidopsis thaliana
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LBD36_ARATH.

Description E-value Query
Range
Subject
Range
gi|110737000 - gi|110737000|dbj|BAF00455.1| hypothetical protein [Arabidopsis thaliana]
362.0 [0..1] [313..1]

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Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAFVH KVFGASNVAK LLNELASNQR  60
   61 EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQVNHDL ENAKKELATY VGPQAMLPIL 120
  121 QPHFMSLPPQ PQRPSSSSAS VLT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 64.853872
Match: PF03195.5
Description: No description for PF03195.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [144-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QHHHNLLPMM AIPTGQLYHQ QQQQIFEAQQ LAAVAREQQN EMFRAYGGGG GSSSPHHQNQ  60
   61 AQAEILRFNN GFDSVPAGSV TVTGFNQLSS GGTAVTGMSL GGNFVDSPST NNNYHTDQQL 120
  121 HHHHQPQQHH EAQLFIPSQS SQPLPLQTQE TQTQTQPNSE SEEGRRNVIG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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