| Protein: | LBD29_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 218 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LBD29_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
247.0 | [0..6] | [218..2] |
|
|
223.0 | [0..6] | [206..2] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL 60
61 PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN LQAELEILKQ QAAQSMIFAD 120
121 S
|
| Detection Method: |  |
| Confidence: | 66.920819 |
| Match: | PF03195.5 |
| Description: | No description for PF03195.5 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.720 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.720 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.643 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.609 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.609 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.587 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.577 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.577 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.569 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.446 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.413 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.393 | N/A | N/A | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.343 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
|
Region A: Residues: [122-218] |
1 11 21 31 41 51
| | | | | |
1 PTSENPNSYY GDTTKAPYHH DHQNIYHHHD QTHLVYQTGS SGTVQHGDAT ESSYHNETSS 60
61 GMGEFSIYSD LEQHLNTFNQ DHLKELQSAN FGYISFS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.303 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.273 | a.118.26 | Description not found. |
| View | Download | 0.268 | a.77.1 | DEATH domain |
| View | Download | 0.252 | d.58.17 | Metal-binding domain |
| View | Download | 0.248 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.243 | a.118.1 | ARM repeat |
| View | Download | 0.219 | d.58.17 | Metal-binding domain |
| View | Download | 0.201 | d.141.1 | Ribosomal protein L6 |
