YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: KPPR_ARATH
Organism: Arabidopsis thaliana
Length: 395 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KPPR_ARATH.

Description E-value Query
Range
Subject
Range
gi|23305934 - gi|23305934|gb|AAN17353.1| phosphoribulokinase precursor [Oryza sativa (indica cultivar-group)]
gi|23305934, gi|... - gi|23305934|gb|AAN17353.1| phosphoribulokinase precursor [Oryza sativa (indica cultivar-group)], gi|...
gi|51964274, gi|... - gi|51979336|ref|XP_507520.1| PREDICTED P0459B01.11 gene product [Oryza sativa (japonica cultivar-gro...
339.0 [0..1] [394..1]

Back

Predicted Domain #1
Region A:
Residues: [1-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSTIYSTQ ALNSTHFLTS SSSSKQVFLY RRQPQTNRRF NTLITCAQET IVIGLAADSG  60
   61 CGKSTFMRRL TSVFGGAAKP PKGGNPDSNT LISDTTTVIC LDDYHSLDRY GRKEQKVTAL 120
  121 DPRANDFDLM YEQVKALKNG IAVEKPIYNH VTGLLDPPEL IQPPKILVIE GLHPMFDERV 180
  181 RDLLDFSIYL DISNEVKFAW KIQRDMAERG HSLESIKASI EARKPDFDAF IDPQKQYADA 240
  241 VIEVLPTTLI PDDNEGKVLR VRLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 1udwA
Description: Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, CTP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleobase, nucleoside, nucleotide kinase activity 2.98849022091298 bayes_pls_golite062009
nucleotide kinase activity 2.24094813695083 bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor 1.96697952975573 bayes_pls_golite062009
kinase activity 1.34679666271693 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
binding 0.995117091387923 bayes_pls_golite062009
hydrolase activity 0.247702859990584 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [265-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEGVKYFSP VYLFDEGSTI SWIPCGRKLT CSYPGIKFNY EPDSYFDHEV SVLEMDGQFD  60
   61 RLDELIYVES HLSNLSTKFY GEVTQQMLKH ADFPGSNNGT GLFQTIVGLK IRDLYEQLIA 120
  121 NKATARAEAK A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.39794
Match: 1bd3D
Description: Uracil PRTase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle