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View Structure Prediction Details

Protein: KCO3_ARATH
Organism: Arabidopsis thaliana
Length: 260 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCO3_ARATH.

Description E-value Query
Range
Subject
Range
gi|13195252 - gi|13195252|gb|AAK15623.1|AF319664_1 delayed rectifier potassium channel Kv2 [Ictalurus punctatus]
193.0 [0..1] [239..242]

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Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMTPSEFKN RLLFGSLPRS SSDPTDLQFT EPNVPPSLFS LPEHNDDTAT DMAPDQETEQ  60
   61 SVSKSIARQA LALLVVYLSL GVLIYWLTLD SDNAYQTHPV AVALYFFVVT FCGFLIVHFV 120
  121 VKIGWLDSFC FSVMMVTTVG FGDRAFNTWL GTFLAAVWLL VSTLAVARAF LFLADARADK 180
  181 RNRERAKKVL GESISISQFF AA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.69897
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [203-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIDNDGRLSL AEFAIYKLKQ MEKITQEDFI QICNQFDKLD RTQSGRITLV DLTTATSV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 1lnqA
Description: Potassium channel-related protein MthK
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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