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View Structure Prediction Details

Protein: KCO2_ARATH
Organism: Arabidopsis thaliana
Length: 443 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCO2_ARATH.

Description E-value Query
Range
Subject
Range
gi|50731319 - gi|50731319|ref|XP_417226.1| PREDICTED: similar to potassium voltage-gated channel shaker-related su...
178.0 [0..12] [431..166]

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Predicted Domain #1
Region A:
Residues: [1-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANDGNGDNN DDPLRQYLMN PRINPPPPSL LTLPENNDVT IPMPITPLEL KNRLIFGSFV  60
   61 RSRKESSLPI DALSQNPSTS SSATTSFSDS TDLLLPLTEP NKPVRKSKPT INFHRSKTAP 120
  121 AMAAINNISH PNDPKTDQQS DSKTIVNQAV ALLVVYLSLG VLIYWLNRDS YNVKQTHPVV 180
  181 DALYFCIVTM CTIGYGDITP DSVVTKLFSI FFVLVGFGFM DILLSGMVTY VLDLQENYML 240
  241 ETARNESLNL NDRDKVRSYI IDVKKGRMRI RLKVGLALGV VVLCLGFGVL IMHFVEKIGW 300
  301 LDSFYFSVMS VTTVGYGDRA FNTLAGRLLA AMWLLVSTLA VARAILFLAE SRVDKRNRER 360
  361 AKKVLGESMS ISQFLDADID CNGCVSKAEF VIYKLKKMDK ITEKDINPIG FQFDKLDRTN 420
  421 SGRITLLDLL ESSTKDLPTA TSI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.69897
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

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