YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: KCO1_ARATH
Organism: Arabidopsis thaliana
Length: 363 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCO1_ARATH.

Description E-value Query
Range
Subject
Range
gi|2230761, gi|2... - gi|2230761|emb|CAA69158.1| kco1 [Arabidopsis thaliana], gi|2181186|emb|CAA65988.1| outward rectifyin...
239.0 [0..1] [363..1]

Back

Predicted Domain #1
Region A:
Residues: [1-61]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDAARTPL LPTEKIDTMA QDFNLNSRTS SSRKRRLRRS RSAPRGDCMY NDDVKIDEPP  60
   61 P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [62-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPSKIPMFSD LNPNLRRVIM FLALYLTIGT LCFYLVRDQI SGHKTSGVVD ALYFCIVTMT  60
   61 TVGYGDLVPN SSASRLLACA FVFSGMVLVG HLLSRAADYL VEKQEALLVR AFHLRQSFGP 120
  121 TDILKELHTN KLRYKCYATC LVLVVLFIVG TIFLVMVEKM PVISAFYCVC STVTTLGYGD 180
  181 KSFNSEAGRL FAVFWILTSS ICLAQFFLYV AELNTENKQR ALVKWVLTRR ITN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.045757
Match: 2a0lA
Description: Crystal structure of KvAP-33H1 Fv complex
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [295-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDLEAADLDE DGVVGAAEFI VYKLKEMGKI DEKDISGIMD EFEQLDYDES GTLTTSDIVL  60
   61 AQTTSQIQR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.92
Match: 1jfjA
Description: EHCABP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle