YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM13_ARATH
Organism:	Arabidopsis thaliana
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM13_ARATH.

Description	E-value	Query Range	Subject Range
TI8AB_MOUSE - Putative mitochondrial import inner membrane translocase subunit Tim8 A-B OS=Mus musculus GN=Timm8a2...	92.0	[0..1]	[87..1]
TI13B_XENLA - Mitochondrial import inner membrane translocase subunit Tim13-B OS=Xenopus laevis GN=timm13-b PE=3 S...	92.0	[0..1]	[86..1]
tim13 - TIM22 inner membrane protein import complex subunit Tim13 TIM13_SCHPO - Mitochondrial import inner membrane translocase subunit tim13 OS=Schizosaccharomyces pombe (strain 9...	91.0	[0..1]	[86..1]
gi\|47225684 - gi\|47225684\|emb\|CAG08027.1\| unnamed protein product [Tetraodon nigroviridis]	91.0	[0..1]	[86..1]
gi\|76660354 - gi\|76660354\|ref\|XP_600831.2\| PREDICTED: similar to translocase of inner mitochondrial membrane 8 hom...	90.0	[0..11]	[87..10]
gi\|89272450, gi\|... - gi\|89272450\|emb\|CAJ82383.1\| translocase of inner mitochondrial membrane 13 homolog a (yeast) [Xenopu...	90.0	[0..1]	[86..1]
gi\|114689461, gi... - gi\|114689461\|ref\|XP_001139457.1\| PREDICTED: translocase of inner mitochondrial membrane 8 homolog A ... ENSCJAT00000009066 - null gi\|109131553 - gi\|109131553\|ref\|XP_001092722.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 8... TIMM8A - translocase of inner mitochondrial membrane 8 homolog A (yeast)	89.0	[0..1]	[87..1]
TIM8A_BOVIN - Mitochondrial import inner membrane translocase subunit Tim8 A OS=Bos taurus GN=TIMM8A PE=3 SV=1 gi\|57112261 - gi\|57112261\|ref\|XP_538107.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 8 hom...	89.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSYSSPPMG GSGSSVSPEV MMESVKTQLA QAYAEELIET LRTKCFDKCV TKPGSSLGGS  60
   61 ESSCISRCVE RYMEATAIIS RSLFTQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits