YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM10_ARATH
Organism:	Arabidopsis thaliana
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM10_ARATH.

Description	E-value	Query Range	Subject Range
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	94.0	[0..2]	[82..112]
TIM10_ASPFU - Mitochondrial import inner membrane translocase subunit tim10 OS=Aspergillus fumigatus GN=tim10 PE=3... TIM10_ASPFU - Mitochondrial import inner membrane translocase subunit tim10 OS=Neosartorya fumigata (strain ATCC M... gi\|159130673 - gi\|159130673\|gb\|EDP55786.1\| mitochondrial intermembrane space translocase subunit Tim10, putative [A... gi\|119496885, gi... - gi\|119496885\|ref\|XP_001265216.1\| mitochondrial intermembrane space translocase subunit Tim10, putati...	90.0	[0..4]	[82..6]
TIM10_YARLI - Mitochondrial import inner membrane translocase subunit TIM10 OS=Yarrowia lipolytica (strain CLIB 12... TIM10_YARLI - Mitochondrial import inner membrane translocase subunit TIM10 OS=Yarrowia lipolytica GN=TIM10 PE=3 S...	89.0	[0..1]	[74..6]
gi\|73955150 - gi\|73955150\|ref\|XP_854099.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	89.0	[0..1]	[78..166]
gi\|87248623, gi\|... - gi\|87248623\|gb\|ABD36364.1\| mitochondrial intermembrane space translocase subunit Tim10 [Bombyx mori]...	88.0	[0..1]	[81..1]
gi\|114195880, gi... - gi\|115388581\|ref\|XP_001211796.1\| mitochondrial import inner membrane translocase subunit tim10 [Aspe...	88.0	[0..9]	[82..11]
gi\|39969151, gi\|... - gi\|39969151\|ref\|XP_365966.1\| hypothetical protein MG10186.4 [Magnaporthe grisea 70-15], gb\|EAA57511....	87.0	[0..3]	[80..332]
ORFP:10389 - YHR005C-A, Contig c37 119194-119475 TIM10 - Essential protein of the mitochondrial intermembrane space, forms a complex with Tim9p (TIM10 comple... gi\|190405788 - gi\|190405788\|gb\|EDV09055.1\| mitochondrial import inner membrane translocase subunit TIM10 [Saccharom... TIM10_YEAST - Mitochondrial import inner membrane translocase subunit TIM10 OS=Saccharomyces cerevisiae (strain AT...	87.0	[0..8]	[79..12]
gi\|5107180 - gi\|5107180\|gb\|AAD40002.1\|AF150096_1 small zinc finger-like protein [Lycopersicon esculentum]	87.0	[0..6]	[81..5]
gi\|5107088 - gi\|5107088\|gb\|AAD39957.1\|AF144706_1 small zinc finger-like protein [Pinus taeda]	86.0	[0..6]	[83..5]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPIPVGVT KEQAFSMAQT EMEYRVELFN KLAQTCFNKC VDKRYKEAEL NMGENSCIDR  60
   61 CVSKYWQVNG MVGQLLSAGK PPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.09691
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits