YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM9_ARATH
Organism:	Arabidopsis thaliana
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM9_ARATH.

Description	E-value	Query Range	Subject Range
TIM9_MESCR - Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum GN=TIM...	104.0	[0..1]	[93..1]
gi\|21617942 - gi\|21617942\|gb\|AAM66992.1\| mitochondrial import inner membrane translocase subunit Tim9 [Arabidopsis...	102.0	[0..1]	[93..1]
TIM9_ORYSA, IM09... - (Q9XGX7) Mitochondrial import inner membrane translocase subunit Tim9, (Q9XGX7) Mitochondrial import...	102.0	[0..1]	[93..1]
gi\|149390691 - gi\|149390691\|gb\|ABR25363.1\| mitochondrial import inner membrane translocase subunit tim9 [Oryza sati... TIM9_ORYSJ - Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9... TIM9_ORYSA - Mitochondrial import inner membrane translocase subunit Tim9 - Oryza sativa (Rice)	101.0	[0..1]	[93..1]
gi\|39969151, gi\|... - gi\|39969151\|ref\|XP_365966.1\| hypothetical protein MG10186.4 [Magnaporthe grisea 70-15], gb\|EAA57511....	96.0	[0..1]	[85..325]
FBpp0310233, Tim8-PA - The gene Tim8 is referred to in FlyBase by the symbol Dmel\Tim8 (CG1728, FBgn0027359). It is a prote... gi\|220950706 - gi\|220950706\|gb\|ACL87896.1\| Tim8-PA [synthetic construct] gi\|195350902, gi... - gi\|195350902\|ref\|XP_002041977.1\| GM11476 [Drosophila sechellia], gi\|194123782\|gb\|EDW45825.1\| GM11476...	94.0	[0..6]	[93..1]
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	93.0	[0..16]	[90..119]
TI8AB_MOUSE - Putative mitochondrial import inner membrane translocase subunit Tim8 A-B OS=Mus musculus GN=Timm8a2...	92.0	[0..1]	[89..1]
TIM9_ZYGBA - Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii GN=TIM9 PE=...	92.0	[0..9]	[92..1]
gi\|87248623, gi\|... - gi\|87248623\|gb\|ABD36364.1\| mitochondrial intermembrane space translocase subunit Tim10 [Bombyx mori]...	90.0	[0..13]	[90..4]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASMMAGLD GLPEEDKAKM ASMIDQLQLR DSLRMYNSLV ERCFVDCVDS FTRKSLQKQE  60
   61 ETCVMRCAEK FLKHTMRVGM RFAELNQNAP TQD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.39794
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits