YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM8_ARATH
Organism:	Arabidopsis thaliana
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM8_ARATH.

Description	E-value	Query Range	Subject Range
gi\|39969151, gi\|... - gi\|39969151\|ref\|XP_365966.1\| hypothetical protein MG10186.4 [Magnaporthe grisea 70-15], gb\|EAA57511....	94.0	[0..3]	[74..333]
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	89.0	[0..12]	[76..123]
gi\|71004396, gi\|... - gi\|71004396\|ref\|XP_756864.1\| hypothetical protein UM00717.1 [Ustilago maydis 521], ref\|XP_398332.1\| ...	86.0	[0..10]	[77..76]
gi\|73955150 - gi\|73955150\|ref\|XP_854099.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	86.0	[0..2]	[75..168]
gi\|32411199, gi\|... - gi\|32411199\|ref\|XP_326080.1\| hypothetical protein [Neurospora crassa], gi\|28924727\|gb\|EAA33840.1\| hy... gi\|85109764 - gi\|85109764\|ref\|XP_963076.1\| hypothetical protein [Neurospora crassa OR74A]	86.0	[0..3]	[76..618]
gi\|5107157 - gi\|5107157\|gb\|AAD39991.1\|AF150084_1 small zinc finger-like protein [Malus x domestica]	85.0	[0..1]	[71..1]
gi\|76660354 - gi\|76660354\|ref\|XP_600831.2\| PREDICTED: similar to translocase of inner mitochondrial membrane 8 hom...	82.0	[0..6]	[75..15]
gi\|114689461, gi... - gi\|114689461\|ref\|XP_001139457.1\| PREDICTED: translocase of inner mitochondrial membrane 8 homolog A ... ENSCJAT00000009066 - null gi\|109131553 - gi\|109131553\|ref\|XP_001092722.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 8... TIMM8A - translocase of inner mitochondrial membrane 8 homolog A (yeast)	80.0	[0..6]	[75..14]
gi\|58268236, gi\|... - gi\|58268236\|ref\|XP_571274.1\| itochondrial import inner membrane translocase subunit [Cryptococcus ne...	80.0	[0..2]	[77..62]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSMANNPE LLQFLAQEKE RAMVNEMVSK MTSVCWDKCI TSAPGSKFSS SESSCLTHCA  60
   61 QRYMDMSMII MKRFNSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.39794
Match:	2bskA
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits