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View Structure Prediction Details

Protein: IF5Y_ARATH
Organism: Arabidopsis thaliana
Length: 439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IF5Y_ARATH.

Description E-value Query
Range
Subject
Range
gi|15810339 - gi|15810339|gb|AAL07057.1| putative eukaryotic translation initiation factor 5 [Arabidopsis thaliana...
393.0 [0..1] [439..1]

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Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQNIGASN RDDAFYRYKM PRMMTKIEGR GNGIKTNVVN MVEIAKALGR PAAYTTKYFG  60
   61 CELGAQSKFD EKNGTSLVNG AHDTSKLAGL LENFIKKYVQ CYGCGNPETE ILITKTQMLQ 120
  121 LKCAACGFLS DVDMRDKLTS FILKNPPEQK KSSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.69897
Match: 2g2kA
Description: No description for 2g2kA was found.

Predicted Domain #2
Region A:
Residues: [155-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKKSMRRAEK ERLREGEAAD EEMRKLKKEA ASKKKAATTG TSKDKVSKKK DHSPPRSLSD  60
   61 ENDQADSEED DDDVQWQTDT SREAAEKRMK EQLSAVTAEM VMLSTVEEKK PVAEVKKAPE 120
  121 QVHENGNSKI PENAHEKLVN EIKELLSSGS SPTQLKTALA SNSANPQEKM DALFSALFGG 180
  181 TGKGFAKEVI KKKKYLLALM MMQEEAGAPA QMGLLNGIES FCMKASAEAA KEVALVIKGL 240
  241 YDEDILDEDV IVEWYNKGVK SSPVLKNVTP FIEWLQNAES ESEEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.39794
Match: 1ug3A
Description: C-terminal portion of human eIF4GI
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle