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View Structure Prediction Details

Protein: EIF3F_ARATH
Organism: Arabidopsis thaliana
Length: 293 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EIF3F_ARATH.

Description E-value Query
Range
Subject
Range
gi|114636591 - gi|114636591|ref|XP_508270.2| PREDICTED: hypothetical protein LOC451007 [Pan troglodytes]
318.0 [0..3] [289..87]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI  60
   61 LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV NSKETIVGWY STGAGVNGGS 120
  121 SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.154902
Match: 2o95A
Description: No description for 2o95A was found.

Predicted Domain #2
Region A:
Residues: [180-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAERVGFDVL KATSVDKLPN DLEGMELTME RLLTLINDVY KYVDSVVGGQ IAPDNNIGRF  60
   61 IADAVASLPK LPPQVFDNLV NDSLQDQLLL LYLSSITRTQ LSLAEKLNTA AQML

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.833 N/A N/A a.41.1 Domain of poly(ADP-ribose) polymerase
View Download 0.828 N/A N/A a.7.8 GAT domain
View Download 0.693 N/A N/A a.118.8 TPR-like
View Download 0.672 N/A N/A d.19.1 MHC antigen-recognition domain
View Download 0.672 N/A N/A a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle