YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: IF2B_ARATH
Organism: Arabidopsis thaliana
Length: 268 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IF2B_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593397, gi|... - gi|21593397|gb|AAM65346.1| translation initiation factor eIF-2 beta chain-like protein [Arabidopsis ...
352.0 [0..1] [268..1]

Back

Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEINEIRE EQEQLAPFDP SKKKKKKKVV IQEPVEDLAE SSQTEKSDSL PVNDGLESSF  60
   61 TGMKKKKKKP TESSLLNNES VDAGEDLDEI ANDEQEGEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.270 N/A N/A a.29.4 RecG, N-terminal domain

Predicted Domain #2
Region A:
Residues: [100-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIVLQQRYPW EGSERDYIYD ELLGRVFNIL RENNPELAGD RRRTVMRPPQ VLREGTKKTV  60
   61 FVNFMDLCKT MHRQPDHVMQ YLLAELGTSG SLDGQQRLVV KGRFAPKNFE GILRRYITDY 120
  121 VICLGCKSPD TILSKENRLF FLRCEKCGSQ RSVAPIKTGF VARVSRRKT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.0
Match: 2d74B
Description: No description for 2d74B was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle