YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: IAA17_ARATH
Organism: Arabidopsis thaliana
Length: 229 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IAA17_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592887 - gi|21592887|gb|AAM64837.1| putative auxin-induced protein, IAA17/AXR3-1 [Arabidopsis thaliana]
330.0 [0..2] [229..1]

Back

Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV  60
   61 TFDSKEKSAC PKDPAKPPAK AQVVG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.346787
Match: PF02309.7
Description: No description for PF02309.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WPPVRSYRKN VMVSCQKSSG GPEAAAFVKV SMDGAPYLRK IDLRMYKSYD ELSNALSNMF  60
   61 SSFTMGKHGG EEGMIDFMNE RKLMDLVNSW DYVPSYEDKD GDWMLVGDVP WPMFVDTCKR 120
  121 LRLMKGSDAI GLAPRAMEKC KSRA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.24
Match: 1ip9A
Description: Bud emergence mediator Bemp1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle