YRC Public Data Repository - Protein Structure Prediction

Protein:	HEM21_ARATH
Organism:	Arabidopsis thaliana
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HEM21_ARATH.

Description	E-value	Query Range	Subject Range
HEM2_ORYSJ - Delta-aminolevulinic acid dehydratase, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMB PE=2 SV...	602.0	[0..1]	[429..1]
gi\|13183730 - gi\|13183730\|gb\|AAK15323.1\|AF332195_1 aminolevulinate dehydratase [Raphanus sativus]	598.0	[0..1]	[430..1]
gi\|13560098 - gi\|13560098\|emb\|CAC36148.1\| ALA dehydratase [Fucus vesiculosus]	597.0	[0..1]	[428..1]
HEM2_SPIOL - Delta-aminolevulinic acid dehydratase, chloroplastic OS=Spinacia oleracea GN=HEMB PE=1 SV=2	595.0	[0..1]	[430..1]
gi\|1041423 - gi\|1041423\|emb\|CAA63139.1\| aminolevulinate dehydratase [Hordeum vulgare subsp. vulgare] HEM2_HORVU - Delta-aminolevulinic acid dehydratase, chloroplastic OS=Hordeum vulgare GN=HEMB PE=2 SV=1	592.0	[0..1]	[427..1]
gi\|1097877 - gi\|1097877\|prf\|\|2114378A aminolevulinate dehydratase	578.0	[0..1]	[430..1]
HEM2_SELMA - Delta-aminolevulinic acid dehydratase, chloroplastic OS=Selaginella martensii GN=HEMB PE=3 SV=1	576.0	[0..28]	[429..20]
gi\|119944101, gi... - gi\|119944101\|ref\|YP_941781.1\| delta-aminolevulinic acid dehydratase [Psychromonas ingrahamii 37], gi...	575.0	[0..99]	[429..3]
gi\|86607365, gi\|... - gi\|86607365\|ref\|YP_476128.1\| delta-aminolevulinic acid dehydratase [Synechococcus sp. JA-3-3Ab], gi\|... gi\|86607365 - gi\|86607365\|ref\|YP_476128.1\| delta-aminolevulinic acid dehydratase [Cyanobacteria bacterium Yellowst...	573.0	[0..101]	[428..2]
gi\|119768843, gi... - gi\|68546484\|ref\|ZP_00586031.1\| Porphobilinogen synthase [Shewanella amazonensis SB2B], gi\|68515898\|g...	571.0	[0..96]	[429..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTPIFNAS CSFPSTRGID CKSYIGLRSN VSKVSVASSR IATSQRRNLV VRASESGNGH  60
   61 AKKLGMSDAE CEAAVAAGNV PEAPPVPPKP AAPVGTPIIK P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [102-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNLSRRPRRN RASPVTRAAF QETDISPANF VYPLFIHEGE EDTPIGAMPG CYRLGWRHGL  60
   61 VQEVAKARAV GVNSIVLFPK VPEALKNSTG DEAYNDNGLV PRTIRLLKDK YPDLIIYTDV 120
  121 ALDPYSSDGH DGIVREDGVI MNDETVHQLC KQAVSQARAG ADVVSPSDMM DGRVGAIRSA 180
  181 LDAEGFQNVS IMSYTAKYAS SFYGPFREAL DSNPRFGDKK TYQMNPANYR EALIEAREDE 240
  241 AEGADILLVK PGLPYLDIIR LLRDKSPLPI AAYQVSGEYS MIKAGGVLKM IDEEKVMMES 300
  301 LMCLRRAGAD IILTYFALQA ATCLCGEKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	148.0
Match:	1w1zA
Description:	Structure of the plant like 5-Aminolaevulinic Acid Dehydratase from Chlorobium vibrioforme
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits