YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: H2B11_ARATH
Organism: Arabidopsis thaliana
Length: 150 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for H2B11_ARATH.

Description E-value Query
Range
Subject
Range
gi|187036007, gi... - gi|39595176|emb|CAE60213.1| Hypothetical protein CBG03777 [Caenorhabditis briggsae], gi|187036007|em...
gi|157745709 - gi|157745709|ref|XP_001667951.1| Hypothetical protein CBG03777 [Caenorhabditis briggsae AF16]
199.0 [0..47] [150..19]

Back

Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKAEKKPA EKKPASEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV  60
   61 ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA QEASKLARYN KKPTITSREI 120
  121 QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.09691
Match: 1eqzB
Description: Histone H2B
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle