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View Structure Prediction Details

Protein: RBG8_ARATH
Organism: Arabidopsis thaliana
Length: 169 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBG8_ARATH.

Description E-value Query
Range
Subject
Range
gi|76689285 - gi|76689285|ref|XP_881509.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 2 ...
132.0 [0..7] [162..295]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM  60
   61 RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 2cjkA
Description: No description for 2cjkA was found.

Predicted Domain #2
Region A:
Residues: [93-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRGGSGGGYR SGGGGGYSGG GGGGYSGGGG GGYERRSGGY GSGGGGGGRG YGGGGRREGG  60
   61 GYGGGDGGSY GGGGGGW

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.3
Match: 1jchA
Description: Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle