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View Structure Prediction Details

Protein: RBG7_ARATH
Organism: Arabidopsis thaliana
Length: 176 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBG7_ARATH.

Description E-value Query
Range
Subject
Range
PABP_ASHGO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii (strain ATCC 10895 / CBS 1...
PABP_ASHGO - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1
137.0 [0..6] [169..320]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK  60
   61 AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG GGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.045757
Match: 2fy1A
Description: No description for 2fy1A was found.

Predicted Domain #2
Region A:
Residues: [104-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSGGGGGYSG GGGSYGGGGG RREGGGGYSG GGGGYSSRGG GGGSYGGGRR EGGGGYGGGE  60
   61 GGGYGGSGGG GGW

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.45
Match: 1jchA
Description: Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle