YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GLR37_ARATH
Organism: Arabidopsis thaliana
Length: 921 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for GLR37_ARATH.

Predicted Domain #1
Region A:
Residues: [1-548]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLGIDPSVA ITALIVVILV VPMDCQRPQL VNIGAVFAFD SVIGRAAKVA LEAAVSDVNN  60
   61 DKSFLKETEL RLLMEDSACN VFRGSFGAFE LLEKEVVAMI GPISSSVAHT ISDIAKGLHF 120
  121 PLVSFAATDP TLSALQFPFF LRTTPNDAHQ MSALVDLINF YGWKEVISVY SDDELGRNGV 180
  181 SALDDELYKK RSRISYKVPL SVHSDEKFLT NALNKSKSIG PRVYILHFGP DPLLRIFDIA 240
  241 QKLQMMTHEY VWLATDWLSV TLDSLSDKGT LKRLEGVVGL RQHIPESVKM EHFTHKLQSN 300
  301 RSMNAYALHA YDTVWMIAHG IEELLNEGIN ITFSYSEKLL HARGTKLHLE KIKFFNSGEL 360
  361 LLEKLLKVNF TGIAGQVQFG SGRNVIGCDY EIINVNKTDV HTVGFWSKNG GFSVVAPKTR 420
  421 HSQKKTSFVS DEKLGDITWP GGGREKPRGW VIADSADPLK IVVPRRVSFV EFVTEEKNSS 480
  481 HRIQGFCIDV FIEALKFVPY SVPYIFEPFG NGHSSPNYNH LIQMVTDGVY DAAVGDIAIV 540
  541 PSRSKLVD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.69897
Match: 2e4uA
Description: No description for 2e4uA was found.

Predicted Domain #2
Region A:
Residues: [549-629]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSQPYASTGL VVVIPANDDN ATWIFLRPFT SRLWCVVLVS FLVIAVVIWI LEHRINEDFR  60
   61 GPPRRQLSTM LLFSFSTLFK R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [630-809]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQEDTISNLA RLVMIVWLFL LMVLTASYTA NLTSILTVQQ LPSAITGIDS LRASEVPIGY  60
   61 QAGTFTLEYL TYSLGMARSR LVPLDSTEEY EKALKLGPTN WGGVAAIVDE LPYIELFLAE 120
  121 RTGFKIVGEP FMHRGWGFAF KRDSPLAIDM STAILKLSET RKLQEIRKKW LCKTNCAGKS 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.0
Match: 1yaeA
Description: Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [810-921]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NWNPEPNQLH LKSFKGLYLV CIAITVSAFL VFVLRMIRQF VRYRRMERTS SMPRASWSAS  60
   61 PTLRLRELVF DFVEFVDEKE EAIKRMFRRS DDSNNNPSHV GEVQADTEVP RN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle