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View Structure Prediction Details

Protein: GLR36_ARATH
Organism: Arabidopsis thaliana
Length: 903 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for GLR36_ARATH.

Predicted Domain #1
Region A:
Residues: [1-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWFLLMLII CNAVPLQGLT KIVSARPQVV NIGSVFTFNS LIGKVIKVAM DAAVEDVNAS  60
   61 PSILNTTTLR IIMHDTKYNG FMSIMEPLQF MESETVAIIG PQRSTTARVV AHVATELKIP 120
  121 ILSFSATDPT MSPLQFPFFI RTSQNDLFQM AAIADIVQFY GWREVVAIYG DDDYGRNGVA 180
  181 ALGDRLSEKR CRISYKAALP PAPTRENITD LLIKVALSES RIIVVHASFI WGLELFNVAR 240
  241 NLGMMSTGYV WIATNWLSTI IDTDSPLPLD TINNIQGVIT LRLHTPNSIM KQNFVQRWHN 300
  301 LTHVGLSTYA LYAYDTVWLL AQAIDDFFKK GGNVSFSKNP IISELGGGNL HLDALKVFDG 360
  361 GKIFLESILQ VDRIGLTGRM KFTSDRNLVN PAFDVLNVIG TGYTTIGYWF NHSGLSVMPA 420
  421 DEMENTSFSG QKLHSVVWPG HSIKIPRGWV FSNNGRHLRI GVPNRYRFEE VVSVKSNGMI 480
  481 TGFCVDVFIA AINLLPYAVP FELVAFGNGH DNPSNSELVR LITTGVYDAG VGDITIITER 540
  541 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.0
Match: 2e4uA
Description: No description for 2e4uA was found.

Predicted Domain #2
Region A:
Residues: [541-608]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKMADFTQPY VESGLVVVAP VRKLGSSAMA FLRPFTPQMW LIAAASFLIV GAVIWCLEHK  60
   61 HNDEFRGP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [609-803]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRRQVITTFW FSFSTLFFSH RETTTSNLGR IVLIIWLFVV LIINSSYTAS LTSILTVHQL  60
   61 SSPIKGIETL QTNHDPIGYP QGSFVRDYLI HELNIHVSRL VPLRSPEEYD KALRDGPGKG 120
  121 GVAAVVDERA YIELFLSNRC EFGIVGQEFT KNGWGFAFPR NSPLAVDVSA AILQLSENGD 180
  181 MQRIRDKWLL RKACS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.045757
Match: 1yaeA
Description: Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [804-903]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQGAEIEVDR LELKSFWGLF VVCGVACVLA LAVYTVLMIR QFGQQCPEEA EGSIRRRSSP  60
   61 SARIHSFLSF VKEKEEDAKA RSSRERQLED ISANGSSRCN 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle