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View Structure Prediction Details

Protein: GLR34_ARATH
Organism: Arabidopsis thaliana
Length: 959 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for GLR34_ARATH.

Predicted Domain #1
Region A:
Residues: [1-562]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLVMIREV SMAKAIRVVL LCVSVLWVVP KECACRSNFS RNSSSSSSSS LRPLRQRPSS  60
   61 VNVGALFTYD SFIGRAAKPA VKAAMDDVNA DQSVLKGIKL NIIFQDSNCS GFIGTMGALQ 120
  121 LMENKVVAAI GPQSSGIAHM ISYVANELHV PLLSFGATDP TLSSLQFPYF LRTTQNDYFQ 180
  181 MHAIADFLSY SGWRQVIAIF VDDECGRNGI SVLGDVLAKK RSRISYKAAI TPGADSSSIR 240
  241 DLLVSVNLME SRVFVVHVNP DSGLNVFSVA KSLGMMASGY VWIATDWLPT AMDSMEHVDS 300
  301 DTMDLLQGVV AFRHYTIESS VKRQFMARWK NLRPNDGFNS YAMYAYDSVW LVARALDVFF 360
  361 RENNNITFSN DPNLHKTNGS TIQLSALSVF NEGEKFMKII LGMNHTGVTG PIQFDSDRNR 420
  421 VNPAYEVLNL EGTAPRTVGY WSNHSGLSVV HPETLYSRPP NTSTANQRLK GIIYPGEVTK 480
  481 PPRGWVFPNN GKPLRIGVPN RVSYTDYVSK DKNPPGVRGY CIDVFEAAIE LLPYPVPRTY 540
  541 ILYGDGKRNP SYDNLVNEVV AD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.30103
Match: 2e4uA
Description: No description for 2e4uA was found.

Predicted Domain #2
Region A:
Residues: [563-836]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFDVAVGDIT IVTNRTRYVD FTQPFIESGL VVVAPVKEAK SSPWSFLKPF TIEMWAVTGG  60
   61 FFLFVGAMVW ILEHRFNQEF RGPPRRQLIT IFWFSFSTMF FSHRENTVSS LGRFVLIIWL 120
  121 FVVLIINSSY TASLTSILTI RQLTSRIEGI DSLVTSNEPI GVQDGTFARN YLINELNILP 180
  181 SRIVPLKDEE QYLSALQRGP NAGGVAAIVD ELPYIEVLLT NSNCKFRTVG QEFTRTGWGF 240
  241 AFQRDSPLAV DMSTAILQLS EEGELEKIHR KWLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.154902
Match: 2a5sA
Description: Crystal Structure Of The NR2A Ligand Binding Core In Complex With Glutamate
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [837-959]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKHECSMQIS NSEDSQLSLK SFWGLFLICG ITCFMALTVF FWRVFWQYQR LLPESADEER  60
   61 AGEVSEPSRS GRGSRAPSFK ELIKVVDKRE AEIKEILKQK SSKKLKSTQS AAGTSQSQHG 120
  121 EIT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle