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View Structure Prediction Details

Protein: GLR33_ARATH
Organism: Arabidopsis thaliana
Length: 933 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for GLR33_ARATH.

Predicted Domain #1
Region A:
Residues: [1-556]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQLWTFFFL SFLCSGLFRR THSEKPKVVK IGSIFSFDSV IGKVAKIAID EAVKDVNSNP  60
   61 DILSGTKFSV SMQNSNCSGF MGMVEALRFM EKDIVGIIGP QCSVVAHMIS HMANELRVPL 120
  121 LSFAVTDPVM SPLQFPYFIR TTQSDLYQMD AIASIVDFYG WKEVIAVFVD DDFGRNGVAA 180
  181 LNDKLASRRL RITYKAGLHP DTAVNKNEIM NMLIKIMLLQ PRIVVIHVYS ELGFAVFKEA 240
  241 KYLGMMGNGY VWIATDWLST NLDSSSPLPA ERLETIQGVL VLRPHTPDSD FKREFFKRWR 300
  301 KMSGASLALN TYGLYAYDSV MLLARGLDKF FKDGGNISFS NHSMLNTLGK SGNLNLEAMT 360
  361 VFDGGEALLK DILGTRMVGL TGQLQFTPDR SRTRPAYDII NVAGTGVRQI GYWSNHSGLS 420
  421 TVLPELLYTK EKPNMSTSPK LKHVIWPGET FTKPRGWVFS NNGKELKIGV PLRVSYKEFV 480
  481 SQIRGTENMF KGFCIDVFTA AVNLLPYAVP VKFIPYGNGK ENPSYTHMVE MITTGNFDGV 540
  541 VGDVAIVTNR TKIVDF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.69897
Match: 2e4uA
Description: No description for 2e4uA was found.

Predicted Domain #2
Region A:
Residues: [557-628]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQPYAASGLV VVAPFKKLNS GAWAFLRPFN RLMWAVTGCC FLFVGIVVWI LEHRTNDEFR  60
   61 GPPKRQCVTI LW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [629-815]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSFSTMFFAH RENTVSTLGR LVLIIWLFVV LIINSSYTAS LTSILTVQQL SSPIKGIESL  60
   61 RERDDPIGYQ VGSFAESYLR NELNISESRL VPLGTPEAYA KALKDGPSKG GVAAIVDERP 120
  121 YVELFLSSNC AYRIVGQEFT KSGWGFAFPR DSPLAIDLST AILELAENGD LQRIHDKWLM 180
  181 KNACTLE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.154902
Match: 1yaeA
Description: Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [816-933]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAELESDRLH LKSFWGLFLI CGVACLLALF LYFVQIIRQL YKKPTDDAIA RDQQQNHDSS  60
   61 SMRSTRLQRF LSLMDEKEES KHESKKRKID GSMNDTSGST RSRGFDRERS FNSVNPLD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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