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View Structure Prediction Details

Protein: GLR23_ARATH
Organism: Arabidopsis thaliana
Length: 895 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLR23_ARATH.

Description E-value Query
Range
Subject
Range
gi|139394522, gi... - gi|68563414|dbj|BAE06155.1| AMPA-selective glutamate receptor 2 flip type [Mus musculus], gi|1393945...
520.0 [0..5] [881..3]

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Predicted Domain #1
Region A:
Residues: [1-479]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTEKLFFCI LLVFFFCLEF NRGQNNGKTL VDVGVVTDVD TSHSKVVMLC INMSISDFYS  60
   61 SNPQFETRLV VNVGDSKSDV VGAAIAALDL IKNKQVKAIL GPWTSMQAHF LIEIGQKSRV 120
  121 PIVSYSATSP ILTSLRSPYF LRATYEDSFQ VQPIKAIIKL FGWREVVPVY IDNTFGEGIM 180
  181 PRLTDALQDI NVRIPYRSVI AINATDHEIS VELLKMMNMP TRVFLVHMYY DLASRFFIKA 240
  241 KELGLMEPGY VWILTNGVID DLSLINETAV EAMEGVLGIK TYIPKSPDLE KFRSRWRSLF 300
  301 PRVELSVYGL WAYDATTALA VAIEEAGTNN MTFSKVVDTG RNVSELEALG LSQFGPKLLQ 360
  361 TLLTVQFRGL AGEFRFFRGQ LQPSVFEIVN IINTGEKSIG FWKEGNGLVK KLDQQASSIS 420
  421 ALSTWKDHLK HIVWPGEADS VPKGWQIPTK GKKLRIGVPK RTGYTDLVKV TRDPITNST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.69897
Match: 2e4uA
Description: No description for 2e4uA was found.

Predicted Domain #2
Region A:
Residues: [480-570]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVTGFCIDFF EAVIRELPYD VSYEFIPFEK PDGKTAGNYN DLVYQVYLGR YDAVVGDTTI  60
   61 LVNRSSYVDF TFPFIKSGVG LIVEMTDPVK R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 1xt8A
Description: Crystal Structure of Cysteine-Binding Protein from Campylobacter jejuni at 2.0 A Resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [571-895]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYILFMKPLS WKLWLTSFIS FFLVGCTVWV LEYKRNPDFS GPPRFQASTI CWFAFSTMVF  60
   61 APRERVFSFW ARALVIAWYF LVLVLTQSYT ASLASLLTSQ KLNPTITSMS SLLEKGETVG 120
  121 YQRTSFILGK LKERGFPQSS LVPFDTAEEC DELLSKGPKK GGVSGAFLEI PYLRLFLGQF 180
  181 CNTYKMVEEP FNVDGFGFVF PIGSPLVADV SRAILKVAES PKAMELERAW FKKKEQSCPD 240
  241 PITNPDPNPS FTSRQLDIDS FLFLFVGVLL VCVMALGNFT YCFLAKDQVS YLDKVEMSPC 300
  301 SSSQQMPVKR KTQLNMSQVH DQDSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 2ia4A
Description: No description for 2ia4A was found.

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