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View Structure Prediction Details

Protein: GLR13_ARATH
Organism: Arabidopsis thaliana
Length: 860 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for GLR13_ARATH.

Predicted Domain #1
Region A:
Residues: [1-555]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERFCIQTQT LLSFLLVLLL FISRSFASTK NDDVDGGKRV QIRVGLVLDL GSLKGKIVKN  60
   61 SVSMALSYFY AIHNDYKTRV SVSLRNSHGE PLLALASAVD LLKTEGVEAI IGGNSLLEAK 120
  121 LLGELGEKAR VPMISLDSPF SLSLSKYTHL IQATHDSTSE AKGITSFINV FDWNSVALVY 180
  181 EDHDDWRESM QLLVEHFHEN GVRVQSKVGF TVSSSEDFVM GRLQQLKDLG TTVFVVHLSE 240
  241 VIATHLFPCA RRLGLMGDGF VWILTAKTMN SFHENIDDFT KQAMEGVVGF KSYIPMSIEL 300
  301 QNFTLRWRKS LPVEEAELTR LSISGIWAHD IAFALARAAE VIRMPNVTST LLEEITKTRF 360
  361 NGLSGDFQLN DKKLLSNKFE IINMIGSSER RVGFLNSNGS FSNRRHLSST HNKLETIIWP 420
  421 GGSAQSPKGT SLIDSDRKKL RVLVTSSNRF PRLMKVETDP VTNELIVEGF CIEVFRASIS 480
  481 PFNYEVEYIP WLNGSNYDNL AYALHSQKDK YDAAVGDITI TSNRSTYVDF TLPFTEMGLG 540
  541 IVAVKERSMW VFFQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.09691
Match: 2e4uA
Description: No description for 2e4uA was found.

Predicted Domain #2
Region A:
Residues: [556-860]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTPDLWITSA FFFVLTGVIV WLIERAENKE FQGSWPQQIG VVLWFGFSTL VYAHREKLKH  60
   61 NLSRFVVTVW VFAVLILTAS YTATLTSMMT VQQIRFNSNE DYVGHLSGSL IANVALTSSS 120
  121 LRAMRSLGLN SAADYAQALL NKTVSFVVDE LPYLKVVLGE NPTHFFMVKT QSTTNGFGFM 180
  181 FQKGFELVPN VSREISKLRT SEKLNEMEKR WFDNQLPYTT DDTSNPITLY RFRGLFIIIG 240
  241 VSFAFALAVL VILCLRDKWE ILVDNLDLSQ RLRHFRIHFV RSIHTSPLDD PIGETAVQMA 300
  301 QQNRQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 1yaeA
Description: Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle