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View Structure Prediction Details

Protein: GLR12_ARATH
Organism: Arabidopsis thaliana
Length: 867 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for GLR12_ARATH.

Predicted Domain #1
Region A:
Residues: [1-558]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRICIQTPI LLSFLLVLLF FISNCFASSQ NNDDDKRIRV RVGLVLDLGS VEGKIVRSSV  60
   61 SMALSDFYDN HNDYKTRLSL LVRDSHGEPL LALDSVVDLL QTEGVQAIIG GNSLLEAKLL 120
  121 AELGEKARVP VISLNSPMSL SLSKYTHLIQ ATHNSASEVK GITAFLHGFD WNSVALVLED 180
  181 HDDWRESMHF MVDHFHENNV HVQSKVAFSV TSSEDSLMDR LRELKDLGTT VFVVHLSEVI 240
  241 ATRLFPCAEK LGMMGEGFAW ILTSRSMSSF HDQFIDDLTK EAMEGVVGFK SYIPMSKELH 300
  301 NFTLRWRKTL PVEEVTGSEI TRLSISGVWA HDVAWSLASA AEVTRMPTVT STLLEAIKES 360
  361 RFKGLSGNFQ LDDMKLLSDK FEIVNMIGSG ERRVGFWNSN GSFSNRRQLS STHDNLETII 420
  421 WPGGSAQSPK GRSLRESGRK KLRVLVTSSN RFPRLMKVET DPITHEITIV EGFCIEVFQA 480
  481 SIAPFNYEVE YIRWLNGTNY TKLAYALHSQ KDKYDAAVGD ITITSDRSMY VDFTLPYTEM 540
  541 GLGIVAAKER SMWVFFQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.154902
Match: 2e4uA
Description: No description for 2e4uA was found.

Predicted Domain #2
Region A:
Residues: [559-867]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTPNLWITSA AFFVLTGIIV WLIERAENKE FQGSWPQQIG VVIWFGFSTL VYAHREKLQH  60
   61 NLSRFVVTVW VFAVLILVTS YTATLTSMMT VQQIRFNANE DYVGHLSGSL IANAALTNSS 120
  121 LRAMRLLGLN TSEDYAQALM NKSVSYIVSE LPYLKILLGE NPGHFLMVKT QSTTNGFGFM 180
  181 FQKGSELAPN VSREIAKLRT SERLNEMERR WFDKQLPYTT DDTSNPITLY RFRGLFMITG 240
  241 VSFAFALAVL LILWLRERWE ILVNSVNIYF SQRLRHFRIL FTRTIHPSPL GLDNPIGENA 300
  301 VQMAQRNRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.0
Match: 1yaeA
Description: Structure of the Kainate Receptor Subunit GluR6 Agonist Binding Domain Complexed with Domoic Acid
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle