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View Structure Prediction Details

Protein: GCSP2_ARATH
Organism: Arabidopsis thaliana
Length: 1044 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for GCSP2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERARRLAYR GIVKRLVNET KRHRNGESSL LPTTTVTPSR YVSSVSSFLH RRRDVSGSAF  60
   61 TTSGRNQHQT RSISVDALKP SDTFPRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNSATPDEQA QMANYCGFDN LNTLIDSTVP KSIRLDSMKF SGIFDEGLTE SQMIEHMSDL  60
   61 ASKNKVFKSF IGMGYYNTHV PPVILRNIME NPAWYTQYTP YQAEISQGRL ESLLNYQTVI 120
  121 TDLTGLPMSN ASLLDEGTAA AEAMAMCNNI LKGKKKTFVI ASNCHPQTID VCKTRADGFD 180
  181 LKVVTVDIKD VDYSSGDVCG VLVQYPGTEG EVLDYGEFVK NAHANGVKVV MATDLLALTM 240
  241 LKPPGEFGAD IVVGSGQRFG VPMGYGGPHA AFLATSQEYK RMMPGRIIGV SVDSSGKQAL 300
  301 RMAMQTREQH IRRDKATSNI CTAQALLANM TAMYAVYHGP EGLKSIAQRV HGLAGVFALG 360
  361 LKKLGTAQVQ DLPFFDTVKV TCSDATAIFD VAAKKEINLR LVDSNTITVA FD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.69897
Match: 1wytA
Description: Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [500-1044]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETTTLDDVDK LFEVFASGKP VQFTAESLAP EFNNAIPSSL TRESPYLTHP IFNMYHTEHE  60
   61 LLRYIHKLQN KDLSLCHSMI PLGSCTMKLN ATTEMMPVTW PSFTNMHPFA PVEQAQGYQE 120
  121 MFTNLGELLC TITGFDSFSL QPNAGAAGEY AGLMVIRAYH MSRGDHHRNV CIIPVSAHGT 180
  181 NPASAAMCGM KIVAVGTDAK GNINIEELRN AAEANKDNLA ALMVTYPSTH GVYEEGIDEI 240
  241 CNIIHENGGQ VYMDGANMNA QVGLTSPGFI GADVCHLNLH KTFCIPHGGG GPGMGPIGVK 300
  301 QHLAPFLPSH PVIPTGGIPE PEQTSPLGTI SAAPWGSALI LPISYTYIAM MGSGGLTDAS 360
  361 KIAILNANYM AKRLESHYPV LFRGVNGTVA HEFIIDLRGF KNTAGIEPED VAKRLMDYGF 420
  421 HGPTMSWPVP GTLMIEPTES ESKAELDRFC DALISIREEI SQIEKGNADP NNNVLKGAPH 480
  481 PPSLLMADTW KKPYSREYAA FPAPWLRSSK FWPTTGRVDN VYGDRNLVCT LQPANEEQAA 540
  541 AAVSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.0
Match: 1wytB
Description: Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle