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View Structure Prediction Details

Protein: GBLPA_ARATH
Organism: Arabidopsis thaliana
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GBLPA_ARATH.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
374.0 [0..3] [325..1202]

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Predicted Domain #1
Region A:
Residues: [1-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT  60
   61 GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR FVGHTKDVLS VAFSLDNRQI 120
  121 VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN 180
  181 LSNCKLRSTL AGHTGYVSTV AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA 240
  241 LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS 300
  301 LNWSADGSTL FSGYTDGVIR VWGIGRY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.522879
Match: 1trjA
Description: Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle