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View Structure Prediction Details

Protein: FPPS1_ARATH
Organism: Arabidopsis thaliana
Length: 384 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FPPS1_ARATH.

Description E-value Query
Range
Subject
Range
gi|168269804, gi... - gi|168269804|dbj|BAG10029.1| farnesyl pyrophosphate synthetase [synthetic construct], gi|123998535|g...
FDPS - farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, ger...
gi|114560081, gi... - gi|114560089|ref|XP_001160292.1| PREDICTED: farnesyl diphosphate synthase isoform 8 [Pan troglodytes...
312.0 [0..26] [384..59]

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Predicted Domain #1
Region A:
Residues: [1-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD  60
   61 LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF KLLKQGNDLT EQEVFLSCAL 120
  121 GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR 180
  181 DKPYYVDLVD LFNEVELQTA CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL 240
  241 PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW 300
  301 LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI 360
  361 EGHQSKAIQA VLKSFLAKIY KRQK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.09691
Match: 1yq7A
Description: Human farnesyl diphosphate synthase complexed with risedronate
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle