YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: FLC_ARATH
Organism: Arabidopsis thaliana
Length: 196 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLC_ARATH.

Description E-value Query
Range
Subject
Range
gi|33309879 - gi|33309879|gb|AAQ03226.1|AF411845_1 MADS box transcription factor [Elaeis guineensis]
202.0 [0..1] [192..1]

Back

Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG  60
   61 DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV DSKLVG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.69897
Match: 1tqeP
Description: Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.0368771990474 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [107-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNVKNVSIDA LVQLEEHLET ALSVTRAKKT ELMLKLVENL KEKEKMLKEE NQVLASQMEN  60
   61 NHHVGAEAEM EMSPAGQISD NLPVTLPLLN 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.017729
Match: PF01486.8
Description: No description for PF01486.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle