YRC Public Data Repository - Protein Structure Prediction

Protein:	FAD6E_ARATH
Organism:	Arabidopsis thaliana
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAD6E_ARATH.

Description	E-value	Query Range	Subject Range
gi\|68164987 - gi\|68164987\|gb\|AAY87459.1\| omega-6 fatty acid desaturase [Hevea brasiliensis]	310.0	[0..1]	[383..1]
gi\|21536781 - gi\|21536781\|gb\|AAM61113.1\| omega-6 fatty acid desaturase, endoplasmic reticulum (FAD2) [Arabidopsis ...	310.0	[0..1]	[383..1]
gi\|8705229 - gi\|8705229\|gb\|AAF78778.1\| delta-12 oleate desaturase [Brassica napus]	304.0	[0..1]	[383..1]
FAD2_VERFO - Delta(12)-fatty-acid desaturase FAD2 OS=Vernicia fordii GN=FAD2 PE=1 SV=1	302.0	[0..1]	[383..1]
gi\|227455386 - gi\|227455386\|gb\|ACP39503.1\| delta-12 oleate desaturase [Brassica napus] gi\|46518253, gi\|... - gi\|46518253\|emb\|CAG26981.1\| fatty acid desaturase 2 [Brassica rapa], gi\|20520624\|emb\|CAD30827.1\| fat...	301.0	[0..1]	[383..1]
gi\|51556906 - gi\|51556906\|gb\|AAT72296.2\| microsomal omega-6-desaturase [Nicotiana tabacum]	301.0	[0..1]	[383..1]
gi\|4378875 - gi\|4378875\|gb\|AAD19742.1\| delta-12 desaturase [Brassica carinata]	301.0	[0..1]	[383..1]
gi\|58013375 - gi\|58013375\|gb\|AAW63041.1\| microsomal delta-12 oleate desaturase [Olea europaea]	300.0	[0..1]	[383..1]
gi\|1054843, gi\|7... - pir\|\|T10480 Delta12 fatty acid desaturase (EC 1.14.99.-) [imported] - Commerson's wild potato, gi\|10...	299.0	[0..1]	[383..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGGRMPVP TSSKKSETDT TKRVPCEKPP FSVGDLKKAI PPHCFKRSIP RSFSYLISDI  60
   61 IIASCFYYVA TNYFSLLPQP LSYLAWPLYW ACQGCVLTGI WVIAHECGHH AFSD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YQWLDDTVGL IFHSFLLVPY FSWKYSHRRH HSNTGSLERD EVFVPKQKSA IKWYGKYLNN  60
   61 PLGRIMMLTV QFVLGWPLYL AFNVSGRPYD GFACHFFPNA PIYNDRERLQ IYLSDAGILA 120
  121 VCFGLYRYAA AQGMASMICL YGVPLLIVNA FLVLITYLQH THPSLPHYD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [284-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSEWDWLRGA LATVDRDYGI LNKVFHNITD THVAHHLFST MPHYNAMEAT KAIKPILGDY  60
   61 YQFDGTPWYV AMYREAKECI YVEPDREGDK KGVYWYNNKL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits