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View Structure Prediction Details

Protein: FLA10_ARATH
Organism: Arabidopsis thaliana
Length: 422 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLA10_ARATH.

Description E-value Query
Range
Subject
Range
gi|14190409 - gi|14190409|gb|AAK55685.1|AF378882_1 AT3g60900/T4C21_310 [Arabidopsis thaliana]
245.0 [0..1] [410..1]

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Predicted Domain #1
Region A:
Residues: [1-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSRAFTLF AFTLSLLTVA STVSGHNITQ ILSDTPEYSS FNNYLSQTKL ADEINSRTTI  60
   61 TVLVLNNGAM SSLAGKHPLS VVKNALSLLV LLDYYDPLKL HQLSKGTTLT TTLYQTTGHA 120
  121 LGNLGFVNVT DLKGGKVGFG SAAPGSKLDS SYTKSVKQIP YNISVLEINA PIIAPGILTA 180
  181 PAPSSAGVSN ITGLLEKAGC KTFANLLVSS GVIKTFESTV EKGLTVFAPS DEAFKARGVP 240
  241 DLTNLTQAEV VSLLEYHALA EYKPKGSLKT NKDAISTLAT NGAGKYDLTT STSGDEVILH 300
  301 TGVGPSRLAD TVVDETPVVI FTVDNVLLPA E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 1o70A
Description: Fasciclin I
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [332-422]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFGKSSSPAP APEPVSAPTP TPAKSPSPVE APSPTAASPP APPVDESSPE GAPSDSPTSS  60
   61 ENSNAKNAAF HVNAPALFTA LVTIAATSLL L

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.44
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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