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View Structure Prediction Details

Protein: EXTN2_ARATH
Organism: Arabidopsis thaliana
Length: 743 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EXTN2_ARATH.

Description E-value Query
Range
Subject
Range
gi|70878483 - gi|70878483|gb|EAN91735.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71649745 - gi|71649745|ref|XP_813586.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
337.0 [0..2] [741..767]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPSAHLISA LGVIIMATMV AAYEPETYAS PPPLYSSPLP EVEYKTPPLP YVDSSPPPTY  60
   61 TPAPEVEYKS PPPPYVYSSP P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPTYSPSPKV DYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYVYNSPP PPYYSPSPKV  60
   61 DYKSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [147-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPYVYSSPP PPYYSPSPKV EYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYVYSSPP  60
   61 PPYYSPSPKV EYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYVYSSPP PPYYSPSPKV 120
  121 DYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYVYSSPP PPYYSPSPKV DYKSPPPPYV 180
  181 YSSPPPPYYS PSPKVDYKSP PPPYVYSSPP PPTYSPSPKV DYKSPPPPYV YSSPPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [383-565]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYYSPSPKVE YKSPPPPYVY SSPPPPTYSP SPKVYYKSPP PPYVYSSPPP PYYSPSPKVY  60
   61 YKSPPPPYVY SSPPPPYYSP SPKVYYKSPP PPYVYSSPPP PYYSPSPKVY YKSPPPPYVY 120
  121 SSPPPPYYSP SPKVYYKSPP PPYVYSSPPP PYYSPSPKVH YKSPPPPYVY SSPPPPYYSP 180
  181 SPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [566-662]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHYKSPPPPY VYNSPPPPYY SPSPKVYYKS PPPPYVYSSP PPPYYSPSPK VYYKSPPPPY  60
   61 VYSSPPPPYY SPSPKVYYKS PPPPYYSPSP KVYYKSP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [663-743]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHPHVCVCPP PPPCYSPSPK VVYKSPPPPY VYNSPPPPYY SPSPKVYYKS PPPPSYYSPS  60
   61 PKVEYKSPPP PSYSPSPKTE Y

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle