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View Structure Prediction Details

Protein: EXPA6_ARATH
Organism: Arabidopsis thaliana
Length: 257 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EXPA6_ARATH.

Description E-value Query
Range
Subject
Range
gi|20502784 - gi|20502784|gb|AAM22625.1|AF428178_1 expansin 11 precursor [Rumex palustris]
384.0 [0..1] [257..1]

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Predicted Domain #1
Region A:
Residues: [1-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMLGLVLSV LTTILALSEA RIPGVYNGGG WETAHATFYG GSDASGTMGG ACGYGNLYSQ  60
   61 GYGVNTAALS TALFNNGFSC GACFELKCAS DPKWCHSGSP SIFITATNFC PPNFAQPSDN 120
  121 GGWCNPPRPH FDLAMPMFLK IAEYRAGIVP VSFRRVPCRK RGGIRFTING FRYFNLVLVT 180
  181 NVAGAGNIVR LGVKGTHTSW MTMSRNWGQN WQSNSVLVGQ SLSFRVTSSD RRSSTSWNIA 240
  241 PANWKFGQTF MGKNFRV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.0
Match: 1n10A
Description: PHL P 1 C-terminal domain; Pollen allergen PHL P 1 N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle