YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: EXPA1_ARATH
Organism: Arabidopsis thaliana
Length: 250 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EXPA1_ARATH.

Description E-value Query
Range
Subject
Range
gi|29467505 - gi|29467505|dbj|BAC67191.1| expansin [Pyrus communis]
373.0 [0..1] [250..3]

Back

Predicted Domain #1
Region A:
Residues: [1-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVTFLFIA TLGAMTSHVN GYAGGGWVNA HATFYGGGDA SGTMGGACGY GNLYSQGYGT  60
   61 NTAALSTALF NNGLSCGACF EIRCQNDGKW CLPGSIVVTA TNFCPPNNAL PNNAGGWCNP 120
  121 PQQHFDLSQP VFQRIAQYRA GIVPVAYRRV PCVRRGGIRF TINGHSYFNL VLITNVGGAG 180
  181 DVHSAMVKGS RTGWQAMSRN WGQNWQSNSY LNGQSLSFKV TTSDGQTIVS NNVANAGWSF 240
  241 GQTFTGAQLR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.39794
Match: 1n10A
Description: PHL P 1 C-terminal domain; Pollen allergen PHL P 1 N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle