YRC Public Data Repository - Protein Structure Prediction

Protein:	EXPB2_ARATH
Organism:	Arabidopsis thaliana
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EXPB2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|1076486, gi\|5... - gi\|555616\|gb\|AAA50175.1\| cytokinin induced message, pir\|\|S48032 cim1 protein - soybean	282.0	[0..1]	[273..1]
gi\|6686395, gi\|2... - gi\|6686395\|gb\|AAF23829.1\|AC007234_1 F1E22.6 [Arabidopsis thaliana], gi\|25404942\|pir\|\|F96681 protein ...	276.0	[0..1]	[264..1]
gi\|3860384 - gi\|3860384\|emb\|CAA10140.1\| major group I allergen Hol l 1 [Holcus lanatus]	271.0	[0..7]	[270..1]
gi\|16076697 - gi\|16076697\|gb\|AAL14079.1\|AF177380_1 acidic Cyn d 1 isoallergen isoform 4 precursor [Cynodon dactylo...	267.0	[0..12]	[273..1]
EXPB6_ORYSA - Expansin-B6 precursor (OsEXPB6) (Beta-expansin-6) (OsaEXPb1.8) - Oryza sativa (Rice) EXPB6_ORYSJ - Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1	267.0	[0..4]	[273..1]
gi\|100636, gi\|65... - gi\|6599300\|emb\|CAB63699.1\| pollen allergen [Lolium perenne], pir\|\|S13614 major allergen Lol p I - pe...	265.0	[0..7]	[270..1]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG  60
   61 YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC YQVKCTSKSA CSKNPVTVVI 120
  121 TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD 180
  181 KGSNANSFAV LVAYVNGDGE IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL 240
  241 RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.0
Match:	2hczX
Description:	No description for 2hczX was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits