YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ERG_ARATH
Organism: Arabidopsis thaliana
Length: 437 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERG_ARATH.

Description E-value Query
Range
Subject
Range
gi|91794116, gi|... - gi|91794116|ref|YP_563767.1| GTP-binding protein Era [Shewanella denitrificans OS217], gi|91716118|g...
246.0 [0..117] [437..4]

Back

Predicted Domain #1
Region A:
Residues: [1-343]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAFRSLRIL ISISRTTTKT TPRNPHQAQN FLRRFYSAQP NLDEPTSINE DGSSSDSVFD  60
   61 SSQYPIDDSN VDSVKKPKEA TWDKGYRERV NKAFFGNLTE KGKVKVAEEE SSEDDEDSVD 120
  121 RSRILAKALL EAALESPDEE LGEGEVREED QKSLNVGIIG PPNAGKSSLT NFMVGTKVAA 180
  181 ASRKTNTTTH EVLGVLTKGD TQVCFFDTPG LMLKKSGYGY KDIKARVQNA WTSVDLFDVL 240
  241 IVMFDVHRHL MSPDSRVVRL IKYMGEEENP KQKRVLCMNK VDLVEKKKDL LKVAEEFQDL 300
  301 PAYERYFMIS GLKGSGVKDL SQYLMDQAVK KPWEEDAFTM SEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.221849
Match: 2hjgA
Description: No description for 2hjgA was found.

Predicted Domain #2
Region A:
Residues: [344-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLKNISLEVV RERLLDHVHQ EIPYGLEHRL VDWKELRDGS LRIEQHLITP KLSQRKILVG  60
   61 KGGCKIGRIG IEANEELRRI MNRKVHLILQ VKLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.69897
Match: 1egaA
Description: GTPase Era, N-terminal domain; GTPase Era C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle