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View Structure Prediction Details

Protein: ERG24_ARATH
Organism: Arabidopsis thaliana
Length: 369 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERG24_ARATH.

Description E-value Query
Range
Subject
Range
LBR_MOUSE - Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2
411.0 [0..5] [369..252]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLDMDLGVL LPSLQSVYVL VFYFVYLAVA GEILPGKVIR GVLLSDGSQL RYRCNGLLAL  60
   61 ILLVAILGIC AKLGIVSPLV VADRGLELLS ATFIFCVLVT LALYVTGRSS SN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGSSLKPHVS GNLVHDWWFG IQLNPQFMSI DLKFFFVRAG MMGWLLINLS ILAKSVQDGS  60
   61 LS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [175-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSMILYQIFC ALYILDYFVH EEYMTSTWDI IAERLGFMLV FGDLLWIPFT FSIQGWWLLH  60
   61 NKVELTVPAI VVNCLVFLIG YMVFRGANKQ KHIFKKNPKT PIWGKPPVVV GGKLLVSGYW 120
  121 GIARHCNYLG DLMLALSFSL PCGISSPVPY FYPIYLLILL IWRERRDEVR CAEKYKEIWA 180
  181 EYLRLVPWRI LPYVY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle