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View Structure Prediction Details

Protein: ERG13_ARATH
Organism: Arabidopsis thaliana
Length: 516 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERG13_ARATH.

Description E-value Query
Range
Subject
Range
gi|11358675, gi|... - gi|3123331|emb|CAA06772.1| squalene epoxidase homologue [Arabidopsis thaliana], pir||T51365 probable...
318.0 [0..1] [516..1]

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Predicted Domain #1
Region A:
Residues: [1-516]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYAWLWTLL AFVLTWMVFH LIKMKKAATG DLEAEAEARR DGATDVIIVG AGVAGASLAY  60
   61 ALAKDGRRVH VIERDLKEPQ RFMGELMQAG GRFMLAQLGL EDCLEDIDAQ EAKSLAIYKD 120
  121 GKHATLPFPD DKSFPHEPVG RLLRNGRLVQ RLRQKAASLS NVQLEEGTVK SLIEEEGVVK 180
  181 GVTYKNSAGE EITAFAPLTV VCDGCYSNLR RSLVDNTEEV LSYMVGYVTK NSRLEDPHSL 240
  241 HLIFSKPLVC VIYQITSDEV RCVAEVPADS IPSISNGEMS TFLKKSMAPQ IPETGNLREI 300
  301 FLKGIEEGLP EIKSTATKSM SSRLCDKRGV IVLGDAFNMR HPIIASGMMV ALSDICILRN 360
  361 LLKPLPNLSN TKKVSDLVKS FYIIRKPMSA TVNTLASIFS QVLVATTDEA REGMRQGCFN 420
  421 YLARGDFKTR GLMTILGGMN PHPLTLVLHL VAITLTSMGH LLSPFPSPRR FWHSLRILAW 480
  481 ALQMLGAHLV DEGFKEMLIP TNAAAYRRNY IATTTV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.522879
Match: 2qa2A
Description: No description for 2qa2A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle