YRC Public Data Repository - Protein Structure Prediction

Protein:	EM6_ARATH
Organism:	Arabidopsis thaliana
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EM6_ARATH.

Description	E-value	Query Range	Subject Range
gi\|226555 - gi\|226555\|prf\|\|1601521E Lea D-19 gene gi\|167381 - gi\|167381\|gb\|AAA92729.1\| storage protein	127.0	[0..2]	[91..12]
EMB1_DAUCA - Protein EMB-1 OS=Daucus carota GN=EMB-1 PE=1 SV=1	110.0	[0..1]	[91..1]
gi\|89275331 - gi\|89275331\|gb\|ABD66069.1\| EMZ08 [Elaeis guineensis]	109.0	[0..1]	[90..1]
gi\|1345529 - gi\|1345529\|emb\|CAA54402.1\| gB19.1b [Hordeum vulgare subsp. vulgare] LE19B_HORVU - Late embryogenesis abundant protein B19.1B OS=Hordeum vulgare GN=B19.1B PE=3 SV=1	108.0	[0..2]	[92..3]
gi\|7594658 - gi\|7594658\|emb\|CAB88092.1\| Early-methionine-labelled polypeptide [Secale cereale]	108.0	[0..2]	[92..3]
gi\|2119767, gi\|5... - gi\|556805\|emb\|CAA77508.1\| Em protein [Arabidopsis thaliana], pir\|\|S71372 embryonic abundant protein ...	107.0	[0..1]	[92..1]
gi\|1754979 - gi\|1754979\|gb\|AAB39474.1\| Em protein	107.0	[0..2]	[92..3]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQQEKKQL DERAKKGETV VPGGTGGKSF EAQQHLAEGR SRGGQTRKEQ LGTEGYQQMG  60
   61 RKGGLSTGDK PGGEHAEEEG VEIDESKFRT KT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	59.040959
Match:	PF00477.8
Description:	No description for PF00477.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits