YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DXS_ARATH
Organism: Arabidopsis thaliana
Length: 717 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DXS_ARATH.

Description E-value Query
Range
Subject
Range
gi|25311124, gi|... - gi|2894445|emb|CAA74713.1| transketolase [Arabidopsis thaliana], gi|25311124|pir||T52289 probable tr...
585.0 [0..1] [717..23]

Back

Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSAFAFPS YIITKGGLST DSCKSTSLSS SRSLVTDLPS PCLKPNNNSH SNRRAKVCAS  60
   61 LAEKGEYYSN RP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.0
Match: 1qs0A
Description: 2-oxoisovalerate dehydrogenase (E1B), PP module
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [73-717]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTPLLDTINY PIHMKNLSVK ELKQLSDELR SDVIFNVSKT GGHLGSSLGV VELTVALHYI  60
   61 FNTPQDKILW DVGHQSYPHK ILTGRRGKMP TMRQTNGLSG FTKRGESEHD CFGTGHSSTT 120
  121 ISAGLGMAVG RDLKGKNNNV VAVIGDGAMT AGQAYEAMNN AGYLDSDMIV ILNDNKQVSL 180
  181 PTATLDGPSP PVGALSSALS RLQSNPALRE LREVAKGMTK QIGGPMHQLA AKVDEYARGM 240
  241 ISGTGSSLFE ELGLYYIGPV DGHNIDDLVA ILKEVKSTRT TGPVLIHVVT EKGRGYPYAE 300
  301 RADDKYHGVV KFDPATGRQF KTTNKTQSYT TYFAEALVAE AEVDKDVVAI HAAMGGGTGL 360
  361 NLFQRRFPTR CFDVGIAEQH AVTFAAGLAC EGLKPFCAIY SSFMQRAYDQ VVHDVDLQKL 420
  421 PVRFAMDRAG LVGADGPTHC GAFDVTFMAC LPNMIVMAPS DEADLFNMVA TAVAIDDRPS 480
  481 CFRYPRGNGI GVALPPGNKG VPIEIGKGRI LKEGERVALL GYGSAVQSCL GAAVMLEERG 540
  541 LNVTVADARF CKPLDRALIR SLAKSHEVLI TVEEGSIGGF GSHVVQFLAL DGLLDGKLKW 600
  601 RPMVLPDRYI DHGAPADQLA EAGLMPSHIA ATALNLIGAP REALF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 126.0
Match: 2o1sA
Description: No description for 2o1sA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle