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View Structure Prediction Details

Protein: DRL39_ARATH
Organism: Arabidopsis thaliana
Length: 623 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DRL39_ARATH.

Description E-value Query
Range
Subject
Range
gi|105923218 - gi|105923218|gb|ABF81464.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]
279.0 [0..1] [613..570]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFNLNDEAR IIGISGMIGS GKTILAKELA RDEEVRGHFA NRVLFLTVSQ SPNLEELRSL  60
   61 IRDFLTGHEA GFGTALPESV GHTRKLVILD DVRTRESLDQ LMFNIPGTTT LVVSQSKLVD 120
  121 PRTTYDVELL NEHDATSLFC LSAFNQKSVP SGFSKSLVKQ VVGESKGLPL SLKVLGASLN 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.221849
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [181-623]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRPETYWAIA VERLSRGEPV DETHESKVFA QIEATLENLD PKTKECFLDM GAFPEGKKIP  60
   61 VDVLINMLVK IHDLEDAAAF DVLVDLANRN LLTLVKDPTF VAMGTSYYDI FVTQHDVLRD 120
  121 VALHLTNRGK VSRRDRLLMP KRETMLPSEW ERSNDEPYNA RVVSIHTGEM TEMDWFDMDF 180
  181 PKAEVLIVNF SSDNYVLPPF IAKMGMLRVF VIINNGTSPA HLHDFPIPTS LTNLRSLWLE 240
  241 RVHVPELSSS MIPLKNLHKL YLIICKINNS FDQTAIDIAQ IFPKLTDITI DYCDDLAELP 300
  301 STICGITSLN SISITNCPNI KELPKNISKL QALQLLRLYA CPELKSLPVE ICELPRLVYV 360
  361 DISHCLSLSS LPEKIGNVRT LEKIDMRECS LSSIPSSAVS LTSLCYVTCY REALWMWKEV 420
  421 EKAVPGLRIE ATEKWFNMTW PDE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 2z7xB
Description: No description for 2z7xB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle