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View Structure Prediction Details

Protein: DRL14_ARATH
Organism: Arabidopsis thaliana
Length: 893 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DRL14_ARATH.

Description E-value Query
Range
Subject
Range
gi|29603482 - gi|29603482|dbj|BAC67706.1| R-protein [Arabidopsis thaliana]
440.0 [0..1] [882..1]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISFSIPFD PCVNKVSQWL DMKGSYTHNL EKNLVALETT MEELKAKRDD LLRRLKREED  60
   61 RGLQRLSEFQ VWLNRVATVE DIIITLLRDR DVEIQRLCLC RFCSKNLTTS YRYGKSVFLR 120
  121 LREVEKLKGE VFGVITE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 1qvrA
Description: Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [138-593]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QASTSAFEER PLQPTIVGQK KMLDKAWKHL MEDGTGIMGM YGMGGVGKTT LLTQLFNMFN  60
   61 KDKCGFDIGI WVVVSQEVNV EKIQDEIAQK LGLGGHEWTQ RDISQKGVHL FNFLKNKKFV 120
  121 LFLDDLWDKV ELANIGVPDP RTQKGCKLAF TSRSLNVCTS MGDEEPMEVQ CLEENVAFDL 180
  181 FQKKVGQKTL GSDPGIPQLA RIVAKKCCGL PLALNVIGET MSCKRTIQEW RNAIHVLNSY 240
  241 AAEFIGMEDK ILPLLKYSYD NLKGEHVKSS LLYCALYPED AKIRKEDLIE HWICEEIIDG 300
  301 SEGIEKAEDK GYDIIGSLVR ASLLMECVDL KGKSSVIMHD VVREMALWIA SELGIQKEAF 360
  361 IVRAGVGVRE IPKVKNWNVV RRMSLMGNKI HHLVGSYECM ELTTLLLGEG EYGSIWRWSE 420
  421 IKTISSEFFN CMPKLAVLDL SHNQSLFELP EEISNL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.522879
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [594-695]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSLKYLNLSH TGIRHLSKGI QELKKIIHLN LEHTSKLESI DGISSLHNLK VLKLYGSRLP  60
   61 WDLNTVKELE TLEHLEILTT TIDPRAKQFL SSHRLMSRSR LL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 2z7xB
Description: No description for 2z7xB was found.

Predicted Domain #4
Region A:
Residues: [696-893]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QIFGSNIFSP DRQLESLSVS TDKLREFEIM CCSISEIKMG GICNFLSLVD VTIYNCEGLR  60
   61 ELTFLIFAPK LRSLSVVDAK DLEDIINEEK ACEGEDSGIV PFPELKYLNL DDLPKLKNIY 120
  121 RRPLPFLCLE KITIGECPNL RKLPLDSRSG KQGENGCIIH YKDSRWLKGV KWADEATKKR 180
  181 FLPSCEHRLE RCETIFED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.39794
Match: 1fqvA
Description: Skp2; Cyclin A/CDK2-associated p19, Skp2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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