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View Structure Prediction Details

Protein: DIM_ARATH
Organism: Arabidopsis thaliana
Length: 561 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DIM_ARATH.

Description E-value Query
Range
Subject
Range
gi|23198318, gi|... - gi|23198318|gb|AAN15686.1| unknown protein [Arabidopsis thaliana], gi|19698879|gb|AAL91175.1| unknow...
381.0 [0..1] [561..1]

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Predicted Domain #1
Region A:
Residues: [1-561]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLQTPLVR PKRKKTWVDY FVKFRWIIVI FIVLPFSATF YFLIYLGDMW SESKSFEKRQ  60
   61 KEHDENVKKV IKRLKGRDAS KDGLVCTARK PWIAVGMRNV DYKRARHFEV DLGEFRNILE 120
  121 INKEKMTARV EPLVNMGQIS RATVPMNLSL AVVAELDDLT VGGLINGYGI EGSSHIYGLF 180
  181 ADTVEAYEIV LAGGELVRAT RDNEYSDLYY AIPWSQGTLG LLVAAEIRLI KVKEYMRLTY 240
  241 IPVKGDLQAL AQGYIDSFAP KDGDKSKIPD FVEGMVYNPT EGVMMVGTYA SKEEAKKKGN 300
  301 KINNVGWWFK PWFYQHAQTA LKKGQFVEYI PTREYYHRHT RCLYWEGKLI LPFGDQFWFR 360
  361 YLLGWLMPPK VSLLKATQGE AIRNYYHDMH VIQDMLVPLY KVGDALEWVH REMEVYPIWL 420
  421 CPHKLFKQPI KGQIYPEPGF EYENRQGDTE DAQMYTDVGV YYAPGCVLRG EEFDGSEAVR 480
  481 RMEKWLIENH GFQPQYAVSE LDEKSFWRMF NGELYEECRK KYRAIGTFMS VYYKSKKGRK 540
  541 TEKEVREAEQ AHLETAYAEA D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.045757
Match: 1wveA
Description: p-Cresol Methylhydroxylase: Alteration of the Structure of the Flavoprotein Subunit upon its Binding to the Cytochrome Subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.6604759449725 bayes_pls_golite062009
transporter activity 1.0088217423461 bayes_pls_golite062009
catalytic activity 0.840929189052895 bayes_pls_golite062009
transmembrane transporter activity 0.766153425961327 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 0.637292637849111 bayes_pls_golite062009
substrate-specific transporter activity 0.597162618720823 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.405774566595444 bayes_pls_golite062009
protein binding 0.303536884253622 bayes_pls_golite062009
ion transmembrane transporter activity 0.195961751118996 bayes_pls_golite062009
cation transmembrane transporter activity 0.04559571856753 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 0.00486865708023021 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle