YRC Public Data Repository - Protein Structure Prediction

Protein:	XERO1_ARATH
Organism:	Arabidopsis thaliana
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XERO1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|72319, gi\|17684 - pir\|\|KNMUHY dehydrin-like protein - Arabidopsis thaliana, gi\|17684\|emb\|CAA45524.1\| dehydrin [Arabido...	104.0	[0..1]	[128..1]
gi\|38343924 - gi\|38343924\|emb\|CAE54590.1\| dehydrin/response ABA [Fagus sylvatica]	91.0	[0..16]	[126..43]
gi\|19032422 - gi\|19032422\|gb\|AAL83427.1\|AF345989_1 48 kDa dehydrin-like protein [Cornus sericea]	87.0	[0..10]	[126..307]
gi\|18076154 - gi\|18076154\|emb\|CAC80717.1\| putative dehydrin [Tithonia rotundifolia]	84.0	[0..4]	[127..116]
DHR15_WHEAT - Dehydrin Rab15 OS=Triticum aestivum GN=RAB15 PE=2 SV=1	83.0	[0..7]	[127..4]
gi\|542105, gi\|19404 - pir\|\|JQ2282 negatively phytochrome regulated protein I - swollen duckweed, gi\|19404\|emb\|CAA45610.1\| ...	82.0	[0..50]	[126..77]
gi\|33943328, gi\|... - gi\|33943334\|gb\|AAQ55371.1\| dehydrin 9 [Hordeum vulgare subsp. spontaneum], gi\|33943332\|gb\|AAQ55370.1... gi\|126467608, gi... - gi\|6017944\|gb\|AAF01697.1\|AF181459_1 dehydrin; DHN9 [Hordeum vulgare], gi\|4105117\|gb\|AAD02260.1\| dehy...	82.0	[0..7]	[127..4]
gi\|12053697 - gi\|12053697\|emb\|CAC20238.1\| putative dehydrin [Helianthus annuus]	80.0	[0..4]	[127..125]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESYQNQSGA QQTHQQLDQF GNPFPATTGA YGTAGGAPAV AEGGGLSGML HRSGSSSSSS  60
   61 SEDDGLGGRR RKKKGITEKI KEKLPGHHDS NKTSSLGSTT TAYDTGTVHH EKKGMMEKIK 120
  121 EKLPGGHH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.79588
Match:	PF00257.10
Description:	No description for PF00257.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits