YRC Public Data Repository - Protein Structure Prediction

Protein:	CYSKM_ARATH
Organism:	Arabidopsis thaliana
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYSKM_ARATH.

Description	E-value	Query Range	Subject Range
gi\|30695056, gi\|... - gi\|30695056\|ref\|NP_851022.1\| OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); ATP binding / cysteine s...	428.0	[0..1]	[429..1]
gi\|166854037, gi... - gi\|167039797\|ref\|YP_001662782.1\| cysteine synthase A [Thermoanaerobacter sp. X514], gi\|166854037\|gb\|...	376.0	[0..112]	[412..7]
gi\|20517485, gi\|... - gi\|20808833\|ref\|NP_624004.1\| cysteine synthase [Thermoanaerobacter tengcongensis MB4], gi\|20517485\|g... gi\|20808833 - gi\|20808833\|ref\|NP_624004.1\| Cysteine synthase [Thermoanaerobacter tengcongensis MB4]	376.0	[0..112]	[412..7]
gi\|92889436 - gi\|92889436\|gb\|ABE89868.1\| Pyridoxal-5-phosphate-dependent enzyme, beta subunit [Medicago truncatula...	375.0	[0..79]	[429..13]
gi\|242258636, gi... - gi\|242258636\|ref\|ZP_04803398.1\| cysteine synthase A [Thermoanaerobacter sp. X513], gi\|242229842\|gb\|E... gi\|166855540, gi... - gi\|76796109\|ref\|ZP_00778477.1\| Cysteine synthase K/M:Cysteine synthase A [Thermoanaerobacter ethanol... gi\|167039426, gi... - gi\|167039426\|ref\|YP_001662411.1\| cysteine synthase A [Thermoanaerobacter sp. X514], gi\|166853666\|gb\|... gi\|241903580, gi... - gi\|241903580\|ref\|ZP_04788302.1\| cysteine synthase A [Thermoanaerobacter brockii subsp. finnii Ako-1]...	374.0	[0..112]	[412..7]
CYSKP_SOLTU - Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1	373.0	[0..40]	[430..2]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAMIMASRF NREAKLASQI LSTLLGNRSC YTSMAATSSS ALLLNPLTSS SSSSTLRRFR  60
   61 CSPEISSLSF SSASDFSLAM KRQSRSFADG SERDPSVVCE AVKRETGPDG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.637	a.277.1	Description not found.
View	Download	0.569	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.557	a.24.3	Cytochromes
View	Download	0.514	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.492	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.475	d.95.2	Homing endonucleases
View	Download	0.391	a.151.1	Glutamyl tRNA-reductase dimerization domain
View	Download	0.388	a.19.1	Fertilization protein
View	Download	0.368	a.181.1	Antibiotic binding domain of TipA-like multidrug resistance regulators
View	Download	0.363	a.156.1	S13-like H2TH domain
View	Download	0.238	d.110.4	SNARE-like

Predicted Domain #2

Region A:
Residues: [111-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNIADNVSQL IGKTPMVYLN SIAKGCVANI AAKLEIMEPC CSVKDRIGYS MVTDAEQKGF  60
   61 ISPGKSVLVE PTSGNTGIGL AFIAASRGYR LILTMPASMS MERRVLLKAF GAELVLTDPA 120
  121 KGMTGAVQKA EEILKNTPDA YMLQQFDNPA NPKIHYETTG PEIWDDTKGK VDIFVAGIGT 180
  181 GGTITGVGRF IKEKNPKTQV IGVEPTESDI LSGGKPGPHK IQGIGAGFIP KNLDQKIMDE 240
  241 VIAISSEEAI ETAKQLALKE GLMVGISSGA AAAAAIKVAK RPENAGKLIA VVFPSFGERY 300
  301 LSTPLFQSIR EEVEKMQPEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.39794
Match:	2isqA
Description:	No description for 2isqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits