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View Structure Prediction Details

Protein: COPE2_ARATH
Organism: Arabidopsis thaliana
Length: 293 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COPE2_ARATH.

Description E-value Query
Range
Subject
Range
gi|71675440, gi|... - gi|71675440|ref|ZP_00673185.1| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi|716...
210.0 [0..3] [292..989]

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Predicted Domain #1
Region A:
Residues: [1-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAMGAGPDH LFNLRNNFYL GAYQTAINNS EIANLSPENA VERDCLVFRS YIALGSYQLV  60
   61 ISEIDESAAT PLQAVKLLAM YLSTPQNKES TISSLKEWLA DSTIGNNDTL RLIAGIIFMH 120
  121 EEDYNETLKH THAGGTMDLY ALNVQIFIKM HRAEYAEKQL RVMQQIDEDH TLTQLASAWL 180
  181 NLAVGGSKIQ EAYLIFEDFS EKYPMTCLIL NGKAVCCMQM GNFDEAETLL LEALNKDAKD 240
  241 PETLANLVVC SLHVGKSSSR HLSQLKLSHP EHILVKRVSS AEDNFERAVQ LVA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.69897
Match: 1w3bA
Description: The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.09193012129784 bayes_pls_golite062009
protein binding 1.52807685989528 bayes_pls_golite062009
signal sequence binding 1.13935627118933 bayes_pls_golite062009
peroxisome targeting sequence binding 0.69717675806841 bayes_pls_golite062009
syntaxin binding 0.0598606763736398 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle