| Protein: | COPE2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 293 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COPE2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
210.0 | [0..3] | [292..989] |
|
Region A: Residues: [1-293] |
1 11 21 31 41 51
| | | | | |
1 MSAMGAGPDH LFNLRNNFYL GAYQTAINNS EIANLSPENA VERDCLVFRS YIALGSYQLV 60
61 ISEIDESAAT PLQAVKLLAM YLSTPQNKES TISSLKEWLA DSTIGNNDTL RLIAGIIFMH 120
121 EEDYNETLKH THAGGTMDLY ALNVQIFIKM HRAEYAEKQL RVMQQIDEDH TLTQLASAWL 180
181 NLAVGGSKIQ EAYLIFEDFS EKYPMTCLIL NGKAVCCMQM GNFDEAETLL LEALNKDAKD 240
241 PETLANLVVC SLHVGKSSSR HLSQLKLSHP EHILVKRVSS AEDNFERAVQ LVA
|
| Detection Method: |  |
| Confidence: | 39.69897 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.09193012129784 | bayes_pls_golite062009 |
| protein binding | 1.52807685989528 | bayes_pls_golite062009 |
| signal sequence binding | 1.13935627118933 | bayes_pls_golite062009 |
| peroxisome targeting sequence binding | 0.69717675806841 | bayes_pls_golite062009 |
| syntaxin binding | 0.0598606763736398 | bayes_pls_golite062009 |
