| Protein: | COBRA_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 456 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COBRA_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
801.0 | [0..1] | [443..1] |
|
|
757.0 | [0..19] | [455..12] |
|
|
757.0 | [0..28] | [456..28] |
|
|
735.0 | [0..29] | [453..23] |
|
|
731.0 | [0..28] | [456..27] |
|
|
726.0 | [0..10] | [452..2] |
|
Region A: Residues: [1-229] |
1 11 21 31 41 51
| | | | | |
1 MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY 60
61 VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT TEQGDCSKYK GNIPHCCKKD 120
121 PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT 180
181 LMGPGPGYTC GPAKIVRPTK FVTTDTRRTT QAMMTWNITC TYSQFLAQR
|
| Detection Method: |  |
| Confidence: | 103.853872 |
| Match: | PF04833.6 |
| Description: | No description for PF04833.6 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [230-324] |
1 11 21 31 41 51
| | | | | |
1 TPTCCVSLSS FYNETIVGCP TCACGCQNNR TESGACLDPD TPHLASVVSP PTKKGTVLPP 60
61 LVQCTRHMCP IRVHWHVKQN YKEYWRVKIT ITNFN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.342 | b.1.1 | Immunoglobulin |
| View | Download | 0.342 | b.1.1 | Immunoglobulin |
| View | Download | 0.320 | b.1.1 | Immunoglobulin |
| View | Download | 0.291 | b.1.2 | Fibronectin type III |
| View | Download | 0.290 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.279 | b.1.1 | Immunoglobulin |
| View | Download | 0.272 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.272 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.255 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.230 | b.1.2 | Fibronectin type III |
|
Region A: Residues: [325-456] |
1 11 21 31 41 51
| | | | | |
1 YRLNYTQWNL VAQHPNLDNI TQIFSFNYKS LTPYAGLNDT AMLWGVKFYN DFLSEAGPLG 60
61 NVQSEILFRK DQSTFTFEKG WAFPRRIYFN GDNCVMPPPD SYPFLPNGGS RSQFSFVAAV 120
121 LLPLLVFFFF SA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.300 | N/A | N/A | d.18.1 | ssDNA-binding transcriptional regulator domain |
| View | Download | 0.276 | N/A | N/A | b.61.2 | Metalloprotease inhibitor |
| View | Download | 0.276 | N/A | N/A | b.61.2 | Metalloprotease inhibitor |
| View | Download | 0.212 | N/A | N/A | a.69.4 | Description not found. |
| View | Download | 0.211 | N/A | N/A | b.60.1 | Lipocalins |
